Epic Quest Bio The case files
Case No. 131 · the exotic forty · have you seen this molecule?

Pd12L24 sphere

a.k.a. “The Fat Man” · 36 pieces that build one sphere by themselves

In The Demon Job he's the Fat Man: a hollow sphere that put itself together from thirty-six pieces, who backs the Demon and pays its bills with ATP that isn't his.

A frame from The Demon Job
The film · 31 minutes

Pd12L24 sphere plays The Fat Man in The Demon Job

A detective made of water, a client who was the first molecule there ever was, and a demon who says he can sort for nothing.

Watch from 7:12, where The Fat Man first appears → or from the start

Booking photographs

Pd12L24 sphere, front view, against a height chart in nanometers
FRONT
Pd12L24 sphere, side view
SIDE · COD 4120364

The suspect, from its real atomic coordinates. Drag to turn it. Height chart in nanometers, ruled every 0.2 nm. A ping-pong ball is about ten million times wider. Mugshot: its X-ray crystal structure.

Rap sheet

  1. Building itself: 12 palladium ions and 24 bent ligands close a hollow ball with no assembly crew.
  2. Making order look free: 36 particles become one, and the flask doesn't object.
  3. Keeping a protein: once assembled around a whole ubiquitin and held on to it (2012).
  4. Switching sizes on a technicality: straighten its arms slightly and 72 pieces build a bigger sphere.
  5. Harboring a 144-piece cousin, in a shape graph theory predicted first.
Answers to
M12L24, or “the nanosphere.”
Height
4.2 nm, any way up.
Weight
13 zeptograms, before its 24 counterions.
Build
A hollow cuboctahedron: 12 palladiums, 24 bent arms.
Weakness
Straighten its arms slightly and 72 pieces build a bigger sphere.
Associates
Once built itself around a whole protein, and kept it.
Family
A 144-piece cousin, in a shape first predicted by graph theory.
Last seen
As a crystal in an X-ray beam, at room temperature.
M.O.
Mix palladium(II) ions with bent bis-pyridyl ligands, one to two, and wait. Each palladium takes four pyridine nitrogens; 48 palladium-nitrogen bonds close a cuboctahedron with a palladium at each of its 12 corners and a ligand along each of its 24 edges. The yield is quantitative.
Associates
ubiquitin, once held inside one; its 72-piece sibling, Pd24L48; a 144-piece cousin, a Goldberg polyhedron (2016)
Priors
First reported in 2004, in a paper titled for its '36 small components'. The crystal in the mugshot is from 2013, measured at room temperature.
60,000,000,000,000,000

of them in a milligram, and every one built itself.
You’ve never seen one.

CASE FILE: Tominaga, M. et al. (2004) Finite, Spherical Coordination Networks that Self-Organize from 36 Small Components. Angew. Chem. Int. Ed. 43, 5621–5625.

“Order isn't a crime. The Law only minds free lunches.” — Keltar, on the case

Case notes: why a self-built sphere is legal

The client's job is what Planck called a perpetual motion machine of the second kind (he credits Ostwald with the name): a machine that, in a cycle and with no other effect, turns heat from one reservoir entirely into work. Kelvin's 1851 statement of the Second Law forbids it to 'inanimate material agency'. The client reads that as an exemption.

Order on its own is not forbidden. Small palladium cages like this one form under thermodynamic control: the sphere is the free-energy minimum. The field states the rule as 'maximum site occupancy' (every metal-ligand interaction satisfied) together with 'maximizing the number of system particles'. Each palladium starts out holding solvent molecules; each pyridine that binds sets one loose. Twelve palladiums times four sites is 48 palladium-nitrogen bonds and 48 freed solvent molecules, while 36 pieces become one: thirteen more free particles than before (a count, not a measured entropy; nobody has published the enthalpy and entropy of this particular assembly). The sphere doesn't even form directly: smaller closed cages appear first and are annealed away.

Sources
  • Tominaga M. et al. 2004, Angew. Chem. Int. Ed. 43:5621-5625, doi:10.1002/anie.200461422
  • Piskorz T. K. et al. 2022, ACS Catal. 12:5806-5826, doi:10.1021/acscatal.2c00837
  • Kai S. et al. 2017, Chem. Asian J. 12:3203, doi:10.1002/asia.201701351
  • Thomson W. (Kelvin) 1851, 'On the dynamical theory of heat', Trans. R. Soc. Edinb. (the 'inanimate material agency' statement)
  • Planck M., Treatise on Thermodynamics, §116
  • Eddington A. S. 1928, The Nature of the Physical World, p. 74
  • Full notes for the series: content/cases/series/demonjob.md

The interrogation room

Keltar, the one-eyed felt detective
Keltar, night shift. Everything he knows about this suspect is in the file.

Keltar is an AI character. He sticks to the file; the conversation is saved and Kent, the CEO, can read it.

The poster on the street

The wanted poster for Pd12L24 sphere

This is the photocopied wanted poster for Pd12L24 sphere, No. 131 of the exotic forty. They were made for noticeboards around Boston, Cambridge and the rest of the east coast.

Found one? Scan its QR code with your phone. If you're a signed-in player, the sighting goes on your record with +1 XP.

Not a player yet? Join the Epic Quest: the real role-playing game of Molecular Reality, a nanopore lab, with the CEO as gamemaster.